well... i havent yet, but 3d will be probably one of the first things i do once i get my system together and running. i enjoy all things 3d, movies, games, or even still photos.
i myself have seen spy kids 3d on a televison, but never had the chance to see it on my computer because i had a bad dvd player in my pc that needed replacing. i have a computer animated movie called santa vs. the snowman that i bought recently and have watched on both a tv and a monitor. and youre right about it being much better on a monitor.
my theory is it should work well (im hoping anyway). afterall, we are still projecting an image thats more than double the resolution of a standard tv keep in mind. perhaps some color adjustment may be needed for anaglyph setups, but it shouldnt be too tough to work out im sure.
my setup when im done with everything will consist of two identical projectors. each polarized properly for use with the 'grey theme park glasses'. this way ill be able to play games in 3d as well without the funky red/blue colorization on images.
nvidia has drivers available for their cards which can utilize this type and pretty much any other 3d setup available, but they only work with nvidia based gpu's.
right now i have the electronic glasses EDimensional sell on their website, and i play games in 3d on my 19 inch crt. its awesome to use them, but id like to go 8'+ screen size, and unfortunatley they wont be compatible with my projector. so the next best option will be the dual polarized pj setup mentioned above.
anyway, im starting construction on my box some time this week, hopefully ill put together a plog if i get a camera to use. either way, 3d will be top on my list upon completing my pj, so ill definetley let you know how it works with an anaglyph film!